REFEREED JOURNAL ARTICLES
56. Kao, P., Malvadkar, N., Wang, H, Allara, D.L., Demirel, M.C.,
“Systematic
Study of Surface Enhancement on Metalized Nanostructured
Poly(p-xylylene) Substrates”, submitted , 2009 PDF
55. Malvadkar, N., Wang, H., Dressick, W.J., Demirel, M.C.
“An Electroless Method of Preparing Metalized Nanostructured
Polymer Films For SERS Applications” submitted, 2009 PDF
54. Demirel, M.C., Kao,
P., Malvadkar, N., Wang, H., Poss, M., Allara,
D.L. “Bio-Organism Sensing Via Surface Enhanced Raman
Spectroscopy on Controlled Metal/Polymer Nanostructured
Substrates”, invited, J. BIOINTERPHASES, 2008 PDF
53. Wang, H, Malvadkar, N,
Cetinkaya, M., Demirel,
M.C.,
“A High-Throughput Method of Creating Nanostructured
Poly(P-Phenylenevinylene) Films” , submitted, 2009. PDF
52. So, E., Wahl, K.J, Demirel
M.C., “Mechanical Properties of Nanostructured
Poly(P-xylylene) Films”, submitted, 2009.PDF
51. Wang, H., Kao, P., Bylander, J., Reeves, W.B., Demirel, M.C.,
“Urine Analysis of Diabetic Patients by
Surface Enhanced Raman Spectroscopy”,
submitted, J. BIOMEDICAL OPTICS, 2009 PDF
50. Malvadkar, N., Dressick,
W.J., Demirel, M.C.,
"Electroless deposition of Titania on Nanostructured Parylene Thin Films",
submitted , JOURNAL of MATERIALS CHEMISTRY, 2009 PDF
49. Cetinkaya, M., Demirel
M.C., "Bridging Experiments and Simulations in Oblique
Angle Polymerization", in press, J. CHEMICAL VAPOR DEPOSITION,
2008.PDF
48. Martin Palma, R, Wang, H., Demirel
M.C., Pantano, C., “Surface Biofunctionalization of Nanostructured
GeSbSe Chalcogenide Glass Thin Films”, J. NON-CRYSTALLINE SOLIDS, Vol. 355, Pages 208-212
, 2009.PDF
47. Malvadkar, N., Mangan, A., Boduroglu, S., Wang, H., Demirel
M.C., "A Template-Free Method of Creating Nanostructured
Polymers", EUROPEAN COATING JOURNAL, Vol. 1, pg. 40-44, 2009.PDF
46. Kao, P., Malvadkar N., Wang, H.,
Allara, D.L., Demirel,
M.C.,
“Surface Enhanced Raman Detection of Bacteria on Metalized
Nanostructured Poly(p-xylylene) Films” ADVANCED
MATERIALS, Vol. 20, pg.
3562-3565,
2008.PDF
45. Malvadkar N., Park, S., Macdonald, M., Wang,
H., Demirel, M.C.,
"Catalytic activity of cobalt deposited on nanostructured
Poly(p-xylylene) films", JOURNAL of POWER SOURCES, Vol. 182, pg.
323-328,
2008. PDF
44. Demirel, M.C.,
“Emergent Properties of
Spatially Organized Poly(P-xylylene) Films Fabricated by Vapor
Deposition" COLLOIDS AND SURFACES A
, Vol. 321, pg. 121-124, 2008.PDF
43. Gullapalli, R., Demirel,
M.C., Butler P.J.
” Molecular dynamics simulation of long-chain carbocyanine
dyes
in a DPPC lipid bilayer”, PHYSICAL CHEMISTRY
CHEMICAL
PHYSICS, Vol. 10, pg 1-13, 2008. PDF
42. Cetinkaya, M., Malvadkar, N., Demirel,
M.C.,
“Power-Law Scaling of Structured Poly(P-Xylylene) Films
Deposited
by Oblique Angle”, JOURNAL OF POLYMER SCIENCE PART B: POLYMER
PHYSICS, Vol. 46, pg 640-648, 2008.PDF
41. Demirel, M.C.,
Cetinkaya, M., Singh, A., Dressick
W.J., “A Non-Covalent Method for Depositing Nanoporous Metals
via
Spatially Organized Poly(P-xylylene) Films”, ADVANCED
MATERIALS, Vol. 19, pg. 4495-4499, 2007.PDF
40. Samuel, B., Demirel,
M.C., Haque, A.M.,
“High resolution deformation and damage detection using
fluorescent dyes”, JOURNAL OF MICROMECHANICS AND
MICROENGINEERING, Vol. 17, pg 2324–2327, 2007 PDF
39. Boduroglu, S., Cetinkaya, M., Dressick, W.J.,
Singh, A., Demirel, M.C.,
“Controlling the Wettability and
Adhesion of Nanostructured Poly-(p-xylylene) Films”,
LANGMUIR,
Vol. 23, pg 11391-11395, 2007. PDF
38. Cetinkaya, M., Boduroglu, S., Demirel,
M.C.,
"Growth of Nanostructured Thin Films of Poly(p-xylylene) Derivatives by
Vapor Deposition“, POLYMER, Vol.48, pg. 4130-4134, 2007. PDF
37. Demirel, M.C.,
Cetinkaya, M, Boduroglu, S.,
Lakhtakia, A., “Spatially Organized Free-Standing
Poly(P-xylylene) Nanowires Fabricated by Vapor Deposition ”,
LANGMUIR, Vol. 23, pg. 5861-5863, 2007.PDF
36. Lakhtakia, A, Demirel,
M.C., Horn, M.W., Xu, J,
"Emerging Directions in Sculptured Thin Film Research", ADVANCES IN
SOLID STATE PHYSICS, Vol. 46, pg 295-307, 2007. PDF
35. Demirel, M.C.,
So, E., Ritty, T., Naidu, S.H.,
Lakhtakia, A. “Nanoengineered Sculptured Thin Films for
Fibroblast Cell Attachment and Growth,” JOURNAL OF BIOMEDICAL
MATERIALS RESEARCH-B, Vol 81B, pg. 219-223, 2007 PDF
34. Cetinkaya, M.C., Zeytun, A., Sofo, J., Demirel,
M.C., “How do insertions affect Green
Fluorescent Protein”,
CHEMICAL PHYSICS LETTERS, Vol. 419, pg. 48-54, 2006.PDF
33. Demirel, M.C.,
Keskin, O. "Protein
Interactions and Fluctuations in a Proteomic Network using an Elastic
Network Model", JOURNAL of BIO-MOLECULAR STRUCTURE and DYNAMICS, Vol.
22, Issue 4, pg 381-386, 2005.PDF
32. Demirel, M.C.,
Cherny, D. "Clustering and
Diversity of Fluctuations for Proteins" JOURNAL OF NANOMEDICINE, vol 1,
Issue 1, pg. 41-46, March 2005.PDF
31. Pursel, S., Horn, M.W., Demirel,
M.C., Lakhtakia,
A., “Growth of Sculptured Polymer Nanowire Assemblies by
Combined
Chemical and Physical Vapor Deposition”, Vol. 46, POLYMER, pg
9544-9548, 2005.PDF
30. Demirel, M.C.,
Lesk A. “Molecular Forces
in Antibody Maturation”, Vol. 95, article no. 208106,
PHYSICAL
REVIEW LETTERS, 2005. PDF
29. Kuprat A.P., George, D.C., Straub, G.K., Demirel, M.C.,
"Modeling Microstructure Evolution in 3 Dimensions with
Grain3D and LaGriT," Vol. 28, COMPUTATIONAL MATERIALS SCIENCE, 2003, pp
199-208.PDF
28. Demirel, M.C.,
Kuprat, A.P, George, D.C., and
Rollett, A.D., "Bridging Experiments and Simulations in Microstructural
Evolution," Vol. 90, Issue 1, PHYSICAL REVIEW LETTERS, 2003, pp 16106. PDF
27. Demirel, M.C.,
Kuprat, A.P, George, D.C., Straub,
G.K. and Rollett, A.D., "Linking Experimental Characterization and
Computational Modeling of Grain Growth in Al-Foil," INTERFACE SCIENCE,
Vol. 10, Issue 2/3, 2002, pp 137 --142.PDF
26. Atilgan, A.R., Durell, S.R., Jernigan, R.L., Demirel, M. C.,
Keskin, O., Bahar, I., "Anisotropy of Fluctuation
Dynamics of Protein with an Elastic Network Model," BIOPHYSICAL
JOURNAL, Vol. 80, No. 1, 2001, pp.505 -- 515.PDF
25. Jernigan, R.L., Demirel,
M. C., Bahar, I.,
"Relating Structure to Function through the Dominant Modes of Motion of
DNA Topoisomerase II," INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Vol.
75, 1999, pp. 301 -- 312.PDF
24. Demirel, M. C.,
Atilgan, A.R., Jernigan, R L.,
Erman, B., Bahar, I., "Identification of Kinetically Hot Residues in
Proteins," PROTEIN SCIENCE, Vol. 7, No. 12, 1998, pp. 2522 -- 2532
(Also appeared at the COVER PAGE). PDF
23. Bahar, I., Atilgan, A.R., Demirel,
M. C., Erman, B., "Vibrational Dynamics of Folded
Proteins: Significance of
Slow and Fast Motions in Relation to Function and Stability," PHYSICAL
REVIEW LETTERS, Vol. 80, No. 12, 1998, pp. 2733 -- 2736.PDF
22. Sayar, M., Demirel,
M. C., Atilgan, A.R.,
"Dynamics of Disordered Structures: Effect of Nonlinearity on the
Localization," JOURNAL OF SOUND AND VIBRATION, Vol. 205, No. 3, 1997,
pp. 372 - 379.PDF
21. Demirel, M.
C., Sayar, M., Atilgan, A.R.,
"Statistical Mechanics of Fermi-Pasta-Ulam Chains with the Canonical
Ensemble, " PHYSICAL REVIEW E, Vol. 55, No. 3, 1997, pp. 3727 -- 3731.PDF
ARTICLES
PUBLISHED IN REFEREED PROCEEDINGS
20. Demirel, M.C.
Kao, P., Malvadkar N., Wang, H., Allara D., Demirel M., A SERS
Substrate for Detection of E.Coli on Nanostructured Poly(p-xylylene),
in Nanotechnology 2008: Life Sciences, Medicine, and Bio Materials,
Romanowicz B., Laudon M., (Eds.) CRC Press, 555-557, (2008). PDF
19. Demirel, M.C.
"Spattially Organized Parylene Nanowires Fabricated by Oblique Angle
Vapor
Deposition" ACS, New Orleans Meeting, preprint, 2008 PDF
18. Demirel, M.C.,
Singh, A. “Novel
Nanostructured Hydroxyl-Paracyclophane Thin Films”, ECS
TRANSACTIONS, BIOLOGICAL NANOSTRUCTURES, MATERIALS, AND APPLICATIONS,
Volume 3, Issue 19, pg 17-20, 2006.
17. Demirel, M.C.,
Parikh, A., Crespi, V., Reed, S.,
"Biologically Inspired Nanomaterials-A Conference Report",
INTERNATIONAL SYMPOSIUM of INSTITUTE OF COMPLEX ADAPTIVE
MATTER
Penn State, November 12-15, Published Online,
http://arxiv.org/abs/0708.0164v1, 2005. PDF
16. Cetinkaya, M., Sofo, J., Demirel,
M.C. "Protein
simulations in confined environments" PROCEEDINGS OF SPIE,
NANOMODELING; Vol. 5509, p. 133-137, 2004. PDF
15. Cetinkaya M., Salway,L., Keskin O, Demirel M.C.,
"Conformational Changes and Small World Association in Proteins",
PROCEEDINGS OF INTERNATIONAL SYMPOSIUM ON NANOSCALE DEVICES, MATERIALS
AND BIOLOGICAL SYSTEMS, 206th Electrochemical Society Meeting,
Honolulu, pg. 1-6, 2004
14. Demirel, M.C.,
Kuprat, A.P., George, D.C.,
Straub, G.K., Misra, A. Alexander, K., Rollett, A.D., "Large Scale
Statistics for Computational Verification of Grain Growth Simulations
with Experiments", PROCEEDINGS OF MATERIAL RESEARCH SOCIETY, Spring
Meeting, Vol. 731, 2002, W6.10.1-W 6.10.8 PDF
13. Demirel, M.C.,
Kuprat, A.P, George, D.C.,
El-Dasher B.S., Carlson, N.N., Straub, G.K. and Rollett, A.D.,
"Comparison of Experimental and Computational Aspects of Grain Growth
in Al-Foil," PROCEEDINGS OF MATERIAL RESEARCH SOCIETY, Fall Meeting,
Vol. 652, 2001, Y1.8.1-Y1.8.6 PDF
12. Demirel, M.C.,
Kuprat, A.P. , George, D.C.,
El-Dasher, B.S., Straub, B.S. and Rollett A.D., "Experimental
Verification of Finite Element Simulation of Curvature Driven
Grain-Growth in Al-foil," PROCEEDINGS OF THE FIRST JOINT INTERNATIONAL
CONFERENCE ON GRAIN GROWTH, Aachen, Germany, Eds. G. Gottstein and D.A.
Molodov, (Springer Verlag, 2001) pp. 297-302. PDF
11. Rolett, A.D., Yang, C.C., Mullins, W.W., Adams,
B.L., Wu, C.T., Kinderlehrer, D., Taasan, S., Manolache, Liu, C.,
Livshits, I, Mason. D, Demirel,
M.C., El-Dasher, B., Yang, W.,
"Grain Boundary property Detemination through Measurement of Triple
Junction Geometry and Crystallography," PROCEEDINGS OF THE FIRST JOINT
INTERNATIONAL
CONFERENCE ON GRAIN GROWTH, Aachen, Germany, Eds. G. Gottstein and D.A.
Molodov, (Springer Verlag, 2001) pp. 165-175. PDF
10. Alparslan, A. K., Sayar, M., Demirel, M. C.,
Atilgan, A. R., "Local Forecasting of Chaotic Time Series," PROCEEDINGS
OF THE 15TH INTERNATIONAL SYSTEM DYNAMICS CONFERENCE, Edited by Y.
Barlas, Istanbul, Turkey, August 19 --22, 1997, pp. 551 -- 554. PDF
9. Sayar, M., Demirel,
M. C., Atilgan, A.R.,
"Dynamics of One-Dimensional Structures with Designed-in Disorder,"
PROCEEDINGS OF THE 20TH CONGRESS OF THE INTERNATIONAL COUNCIL OF THE
AERONAUTICAL SCIENCES, Sorrento, Italy, September 8 -- 13, 1996, Vol.
2, pp. 1418 -- 1425. PDF
PARTS OF
BOOKS
8. Malvadkar, N., Ulizio, M., Lowman, J., Demirel,
M.C., “Functional
Nanostructured Polymer-Metal Interfaces”, VIRTUAL TESTING and
PREDICTIVE
MODELING, B. Farahmand, Ed., Springer Publishing Company, in press,
2008. PDF
7. Demirel, M.C.,
Moran Lopez, J.L., DeLong, H.,
Rusling, R., “Biological Nanostructures, Materials, and
Applications”, ECS TRANSACTIONS, Biological Nanostructures,
Materials, and Applications, Volume 3, Issue 19, Preface, 2006. PDF
6. Demirel, M. C.,
El-Dasher B.S., Adams B.L., Rollett A.D., "Studies on the
Accuracy of Electron Backscatter
Diffraction Measurements," ELECTRON BACKSCATTER DIFFRACTION IN
MATERIALS SCIENCE, A. J. Schwartz, M. Kumar, and B. L. Adams, Eds.,
Kluwer Academic/Plenum Publishers, New York, Chapter 6, 2000, pp. 65 -
74.PDF
5. Sayar, M., Demirel,
M. C., Atilgan, A.R.,
"Some Observations on the Nonclassical Behavior of Structures,"
V.Yerlici - ENGINEERING AND EDUCATION, A Volume Honoring Prof. Dr.
Vedat Yerlici, Edited by G. A. Altay, May 22, 1997, pp. 347 -- 359. PDF
PATENTS
4. Demirel, M.C., Dressick, W.J., Singh., A., “METHODS FOR
CONTROLLING ADHESION OF NANOSTRUCTURED THIN FILMS” filed with
the U.S. Patent and Trademark Office on April 28, 2008, Serial Number:
61/048475.
3. Demirel M.C.,
Singh, A., Dressick,
W.J., “NANOPOROUS THIN
FILMS AND MULTI-FUNCTIONAL LAYERS VIA SPATIALLY ORGANIZED
POLYMERS” Filed to US Patent office on April 24, 2008,
Serial Number: 12/108,549
2. Demirel M.C.,
Lakhtakia, A “METHOD AND SYSTEMS FOR
FORMING AND USING NANOENGINEERED SCULPTURED THIN FILMS”,
USPTO,
Application number: 20070148206
1. Demirel M.C.,
Dressick, W.J., Allara, D.L., "SURFACE ENCHANCED RAMAN
DETECTION ON METALLIZED NANOSTRUCTURED POLYMER FILMS", Filed to US
patent office on June 3rd, 2008., Serial Number: 61/058,275